PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_D5FD1D5CE.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 838aa    MW: 96488.1 Da    PI: 7.2797
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_D5FD1D5CE.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1638.9e-20203284291
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                            fY++YA  +GF  ++++++++      +k++  C+++gk+++ ++  +++r+ ++ +rt+C+ak+ vk++ +g+we +++++eHnH+l
  Traes_5BS_D5FD1D5CE.2 203 FYSTYALLTGFVAKRNSNYRR------KKYHIECNRSGKPTPARNP-NRKRKINSFERTNCQAKVIVKLT-KGQWEFATVRNEHNHPL 282
                            9****************9999......5789***********9998.9**********************.9**************** PP

                   FAR1  90 ap 91 
                            +p
  Traes_5BS_D5FD1D5CE.2 283 CP 284
                            97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-17203284IPR004330FAR1 DNA binding domain
PfamPF105515.5E-22424508IPR018289MULE transposase domain
PROSITE profilePS509668.493707743IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MAVLVFWRDE GEEGDAWQFI MTGMVTELDK PGAETADNST KKRRTCRVAD DQGSPVPELH  60
RKKASKNAAE TMSSASELSK EPVGKQSMTE ERPEPTGDSY EELSSDSIEK NTDGVLADEA  120
DKETNSVDHS LQQAEEQNQL HDNVENIEMV NRNPSESDSD SSSGSDSDSE LGKYFYPKFE  180
ELEAARKPEP GMKFQTLEDA NGFYSTYALL TGFVAKRNSN YRRKKYHIEC NRSGKPTPAR  240
NPNRKRKINS FERTNCQAKV IVKLTKGQWE FATVRNEHNH PLCPNPSLAR FFLSQKHMSS  300
EEKSFLKVLQ QCKIPPSKIL RIFRRMRSSF GNISFKKQGP VSSARSSSEN IPSKKKDPVS  360
LQCTEQRKTE NSDVESALKH FKELELRNPS FFYIKQTDED NVVRSIFWTD ARSRMDYDIF  420
GDFISVDTTY TTNRHNLPVA TIIGINNHGR TLLLGCALLR DGRAETFKWM FQTLLQVMGG  480
KIPGSIITNQ DEPLGRAIAE VLPQVRLRFW KCDVMGKAHE RIAAFMAARG NIKLELDSLV  540
DNSLTEMEFE EGWSSLIERY DASKNEYLQF MWRIRKIWAP VYFRQDFYPF AESLGRGEGM  600
NIVLFRNYVL PKDRIEKFIE RYEEIQKTTL KTDDEDRRQA RTVPSCFSLQ PIEKHASTIY  660
TRQIFLKVQR ELLHSTAFDV QVVKKGSVYR LERAFNYENP EFDRNAFEVF VDPVSNTFIC  720
QCAKFARDRL LCCHIFRLFT QLGINEIPAQ YIVPRWTDKF KEEKAKQYTE KCLEKADSTA  780
RYEMLMSKMA DLSKKICSDG AKCNTFMLEF DSIQEKLLAT EGENPRNSDN CMEIITTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755491.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5FP140.0W5FP14_WHEAT; Uncharacterized protein
STRINGMLOC_53882.40.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.13e-72FAR1 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]